Retrieve and Relate Wiki

Buttons

Buttons

Short descriptions of our buttons

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Run Again

Repeat this search query

 

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Search

Paste your sequence here (genetic/transcriptomic/proteomic) or the name of an organism/strain/species, using particular keywords such as ‘similar’, ’and’, ’or’, ’andnot’

 

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Back

Return to Homepage

 

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View Panel

Toolbar containing 4 buttons to switch viewing data between Quick Filter, List, Explorer and Alignment View

 

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Apply Filter

Select only the chosen attributes in Quick Filter View to process the search results

 

Reset

Remove all chosen attributes

 

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Your Filters

Apply more data-specific filters to narrow down your search results. Options are: Data Source, GO Definition, GO ID, Sequence Type & High Level Ontology

 

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Fields in List View

Opens a pop-up window to choose among the following attributes:

  1. External Link: The URL from which we extracted the GO information

  2. Description: The annotation information that best describes this sequence

  3. Data Source: Database which contains this information

  4. Sequence Type: Either of DNA/RNA/AA

  5. Gene ontology definition: Annotate functionality of gene and/or gene product

  6. High level ontologies: General definition of what aspects this sequence affects in the organism [biological process/molecular function/cellular component]

 

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Dimension

Opens a pop-up window to choose among the following attributes:

  1. CATH Topology

  2. Data Source

  3. Sequence Type

  4. PFC (Gene Ontology)

  5. Taxonomy

  6. Top Concepts

 

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Download

Store the results of your search query as a (.csv) file

 

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Sort Icon

Can sort entire table alphabetically on the basis of the chosen attribute in this column. Upward arrow indicates ascending order

 

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Filter Icon

Can show only those records in the table that contain a particular word/substring

 

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Sort

Click “Row”/”Column” button to switch between them or “Name”/”Count” button to switch between them. The right-most icon decides ascending/descending order. Eg, “Row” and “Count” with a downward arrow in its icon will sort the numerical data in each row in descending order

 

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Rows & Columns

Modify table in Explorer View by choosing appropriate domain in Row Header and Column Header. By default, Row is Sequence Type and Column is Data Source